Journal: Heredity

Article Title: Purifying selection and genetic drift shaped Pleistocene evolution of the mitochondrial genome in an endangered Australian freshwater fish

doi: 10.1038/hdy.2016.120

Figure Lengend Snippet: MrBayes majority rule consensus tree built from complete mitogenome sequences (rooted with golden perch Macquarie ambigua, not shown). Numbers are Bayesian posterior probability >0.8 for each node. Letters in italic are labels of amino-acid replacements inferred to be under selection by TREESAAP, MEME, FUBAR and/or Codeml models (Table 2); letters without numbers indicate replacements affecting a single lineage, and letters with numbers indicate codons with replacements in multiple lineages across the phylogeny. The branches over which the nonsynonymous replacements occurred were inferred by TreeSAAP analysis based on ancestral sequence reconstructed for each node. Numbers and letters in italic indicate BEAST 95% highest posterior density (HPD) estimates of time to most recent common ancestor for major lineages and sublineages (nodes indicated by black circles; KY, thousands of years).

Article Snippet: In the HNB there were two well-supported (PP=1) clades, corresponding to the northern HNB (Colo, Capetree, Wollemi, Wheeny and Wollangambe) and southern HNB (remaining HNB samples). fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window caption a7 MrBayes majority rule consensus tree built from complete mitogenome sequences (rooted with golden perch Macquarie ambigua , not shown).

Techniques: Selection, Sequencing